## To see the full list of options available, run: "tw pipelines add -h"
## The options required to create pipelines can be specified:
##   1. Explicitly in this file
##   2. Via a JSON file exported from Seqera with the "tw pipelines export" command
pipelines:
  - name: 'your-first-pipeline'                               # required
    workspace: 'your-organization/workspace-1'                # required
    description: 'Options specified in this file'             # optional
    compute-env: 'your-aws-compute-environment'               # required
    work-dir: 's3://your-bucket'                              # optional
    profile: 'test'                                           # optional
    revision: 'main'                                          # required
    params:                                                   # optional
      outdir: 's3://your-bucket/results'
    config: './pipelines/nextflow.config'                     # optional
    pre-run: './pipelines/pre-run.txt'                        # optional
    url: 'https://github.com/my_username/my_repo'             # required
    overwrite: True                                           # optional
  - name: 'your-second-pipeline'                              # required
    workspace: 'your-organization/workspace-1'                # required
    description: 'Options specified via JSON file'            # optional
    compute-env: 'your-aws-compute-environment'               # required
    file-path: './pipelines/pipeline.json'                    # required
    overwrite: True                                           # optional